/*- This file is part of the RKWard project (https://rkward.kde.org).
SPDX-FileCopyrightText: by Thomas Friedrichsmeier <thomas.friedrichsmeier@kdemail.net>
SPDX-FileContributor: The RKWard Team <rkward-devel@kde.org>
SPDX-License-Identifier: GPL-2.0-or-later
*/
function preprocess() {
	var x = getValue("x");
	var y = getValue("y");
	var ties = getValue("ties");
	if (ties) {
		echo("\trequire(exactRankTests)\n");
	} else {
	}
	echo("\tnames <- rk.get.description (" + x);
	if (y) {
		echo(", " + y);
	} else {
	}
	echo(")\n");
}

function calculate() {
	// read in variables from dialog
	var x = getValue("x");
	var y = getValue("y");
	var alternative = getValue("alternative");
	var paired = getValue("paired");
	var svbSvrsltst = getValue("svb_Svrsltst");
	var conflevel = getValue("conflevel");
	var mu = getValue("mu");
	var exact = getValue("exact");
	var correct = getValue("correct");
	var ties = getValue("ties");
	var confintChecked = getValue("confint.checked");

	// the R code to be evaluated
	var confintChecked = getValue("confint.checked");
	echo("\twcox.result <- ");
	if (ties) {
		echo("wilcox.exact(");
	} else {
		echo("wilcox.test(");
	}
	if (x) {
		echo("\n\t\tx=" + x);
	} else {
	}
	if (y) {
		echo(",\n\t\ty=" + y);
	} else {
	}
	if (alternative != "two.sided") {
		echo(",\n\t\talternative=\"" + alternative + "\"");
	} else {
	}
	if (mu != 0) {
		echo(",\n\t\tmu=" + mu);
	} else {
	}
	if (y && paired) {
		echo(",\n\t\tpaired=TRUE");
	} else {
	}
	if (exact != "automatic") {
		echo(",\n\t\texact=" + exact);
	} else {
	}
	if (correct) {
		echo(",\n\t\tcorrect=TRUE");
	} else {
	}
	if (confintChecked) {
		echo(",\n\t\tconf.int=TRUE");
		if (conflevel != 0.95) {
			echo(",\n\t\tconf.level=" + conflevel);
		} else {
		}
	} else {
	}
	echo("\n\t)\n\n");
}

function printout(is_preview) {
	// printout the results

	var y = getValue("y");
	var confintChecked = getValue("confint.checked");
	var correct = getValue("correct");
	var mu = getValue("mu");
	if (!is_preview) {
		var header = new Header(noquote('wcox.result$method'));
		header.add(i18n("Comparing"), noquote('names[1]'));
		if (y) header.add(i18nc("compare against", "against"), noquote('names[2]'));
		header.add("H1", noquote('rk.describe.alternative (wcox.result)'));
		header.add(i18n("Continuity correction in normal approximation for p-value"), correct ? "TRUE" : "FALSE");
		header.addFromUI("exact");
		if (y) header.addFromUI("paired");
		header.addFromUI("mu");
		header.print();
	}
	echo("rk.results (list (\n\t" + i18n("Variable Names") + "=names,\n\t" + i18nc("a statistic indicator", "Statistic") + "=wcox.result$statistic,\n\t" + i18n("Location Shift") + "=wcox.result$null.value,\n\t" + i18n("Hypothesis") + "=wcox.result$alternative,\n" +
	     "\tp=wcox.result$p.value");
	if (confintChecked) {
		echo(",\n\t" + i18n("Confidence interval percent") + "=(100 * attr(wcox.result$conf.int, \"conf.level\")),\n\t" + i18n("Confidence interval of difference") + "=wcox.result$conf.int,\n\t" + i18n("Difference in Location") + "=wcox.result$estimate");
	} else {
	}
	echo("))\n");
	// save result, if requested
	if (getBoolean("svb_Svrsltst.active")) {
		echo("\n\t.GlobalEnv$" + getString("svb_Svrsltst") + " <- wcox.result\n");
	}
}
